Publications
Kostic Lab members underlined.
*equal contributor
†corresponding author
E. coli Nissle 1917 modulates host glucose metabolism without directly acting on glucose
Scientific Reports, 2021
Chavkin TA, Pham LD, and Kostic AD†. PMID: 34853343
Using Cartesian Doubt to build a sequencing-based view of microbiology
mSystems, 2021
Tierney BT†, Szymanski E, Henriksen JR, Kostic AD†, and Patel CJ†. PMID: 34636670
Leveraging vibration of effects analysis for robust discovery in observational biomedical data science
PLoS Biology, 2021
Tierney BT, Anderson E, Tan Y, Claypool K, Tangirala S, Kostic AD, Manrai AK, and Patel CJ. PMID: 34555021
Reconstruction of ancient microbial genomes from the human gut
Nature, 2021
Wibowo MC, Yang Z, Borry M, Hübner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, García-Ortiz H, Martínez-Hernández A, Luber JM, Kirstahler P, Blohm T, Smiley FE, Arnold R, Ballal SA, Pamp SJ, Russ J, Maixner F, Rota-Stabelli O, Segata N, Reinhard K, Orozco L, Warinner C, Snow M, LeBlanc S, and Kostic AD†. PMID: 33981035
Gene-level metagenomic architectures across diseases yield high-resolution microbiome diagnostic indicators
Nature Communications, 2021
Tierney BT, Tan Y, Kostic AD†, and Patel CJ†. PMID: 34006865
Mechanisms of microbial-neuronal interactions in pain and nociception
Neurobiology of Pain, 2021
Lagomarsino VN, Kostic AD†, and Chiu IM†. PMID: 33392418
A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type
PLoS Computational Biology, 2020
Le Goallec A*, Tierney BT*, Luber JM, Cofer EM, Kostic AD†, and Patel CJ†. PMID: 32392251
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content
PeerJ, 2020
Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Samdapawindé Kagoné T, Meda N, Carabin H, Jacobson D, Reinhard K, Lewis C, Kostic AD, Jeong C, Herbig A, Hübner A, and Warinner C†. PMID: 32337106
The landscape of genetic content in the gut and oral human microbiome
Cell Host & Microbe, 2019
Tierney BT, Yang Z, Luber JM, Beaudin M, Wibowo MC, Baek C, Mehlenbacher E, Patel CJ†, and Kostic AD†. PMID: 31415755
Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism
Nature Medicine, 2019
Scheiman J*, Luber JM*, Chavkin TA*, MacDonald T, Tung A, Pham LD, Wibowo MC, Wurth RC, Punthambaker S, Tierney BT, Yang Z, Hattab MW, Avila-Pacheco J, Clish CB, Lessard S, Church GM†, and Kostic AD†. PMID: 31235964
Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing
Gigascience, 2018
Fang C, Zhong H, Lin Y, Chen B, Han M, Ren H, Lu H, Luber JM, Xia M, Li W, Stein S, Xu X, Zhang W, Drmanac R, Wang J, Yang H, Hammarström L, Kostic AD, Kristiansen K, and Li J. PMID: 29293960